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Ionis Pharmaceuticals Quarterly Balance Sheets Chart

Quarterly
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Annual
 
 Cash and Cash Eq  
 Account Payables  
 Inventory  
20131231 20140331 20140630 20140930 20181231 20190331 20220331 20220630 20220930 20221231 20230331 20230630 20230930 20231231 20240331 20240630 20240930 20241231 20250331 20250630 077.5155232.51310.01387.51465.01542.51Milllion

Ionis Pharmaceuticals Quarterly Balance Sheets Table

Quarterly
 | 
Annual
 
Unit: USD2025-06-30 2025-03-31 2024-12-31 2024-09-30 2024-06-30 2024-03-31 2023-12-31 2023-09-30 2023-06-30 2023-03-31 2022-12-31 2022-09-30 2022-06-30 2022-03-31 2019-03-31 2018-12-31 2014-09-30 2014-06-30 2014-03-31 2013-12-31 2013-09-30 2013-06-30 2013-03-31 2012-12-31 2012-09-30 2012-06-30 2012-03-31 2011-12-31 2011-09-30 2011-06-30 2011-03-31 2010-12-31 2010-09-30 2010-06-30 2010-03-31 2009-12-31 2009-09-30 2009-06-30 2009-03-31 2008-12-31 2008-09-30 2008-06-30 2008-03-31 2007-09-30 2007-06-30 2007-03-31 2006-12-31 2006-09-30 2006-06-30 2006-03-31 2005-12-31 2005-09-30 2005-06-30 2005-03-31 2004-09-30 2004-06-30 2004-03-31 2003-12-31 
                                                            
  assets                                                          
  current assets:                                                          
  cash and cash equivalents297,304,000 264,192,000 242,077,000 334,605,000 293,993,000 348,889,000 399,266,000 352,060,000 424,790,000 309,031,000 276,472,000 314,993,000 521,917,000 542,513,000 375,811,000 278,820,000 73,220,000 94,081,000 161,778,000 159,973,000 256,408,000 296,540,000 107,650,000 124,482,000 84,563,000 85,645,000 56,391,000 65,477,000 55,263,000 85,022,000 86,200,000 70,052,000 100,122,000 46,038,000 98,590,000 105,255,000 149,293,000 215,789,000 254,057,000 217,918,000 264,682,000 445,720,000 271,936,000 102,398,000 132,964,000 183,423,000 114,514,000 104,238,000 105,359,000 1,711,000 3,650 53,222,000 7,988,000 12,006,000 21,446,000 30,371,000 39,757,000  
  short-term investments1,992,676,000 1,880,960,000 2,055,579,000 2,148,671,000 1,784,693,000 1,857,327,000 1,931,935,000 1,883,522,000 1,960,598,000 2,037,750,000 1,710,397,000 1,666,670,000 1,499,910,000 1,509,880,000 1,877,943,000 1,805,252,000 518,766,000 496,754,000 469,515,000 496,788,000 414,490,000 294,212,000 264,261,000 249,964,000 259,010,000 250,384,000 277,553,000 278,187,000 309,500,000 310,162,000 340,622,000 402,301,000 397,782,000 475,990,000 420,529,000 469,057,000 458,547,000 421,722,000 398,179,000 273,080,000 247,341,000 91,249,000 66,479,000 43,593,000 69,769,000 102,131,000 78,819,000 22,633,000 32,581,000 76,850,000 90,739 48,435,000 51,592,000 70,778,000 104,119,000 116,973,000 141,116,000  
  contracts receivable52,580,000 39,707,000 92,188,000 17,928,000 27,259,000 5,140,000 97,778,000 142,359,000 27,956,000 13,914,000 25,538,000 6,645,000 6,751,000 26,122,000 10,452,000 12,759,000 26,313,000 41,941,000 9,823,000 11,102,000 12,645,000 2,024,000 1,172,000 522,000 3,476,000 1,558,000 1,379,000 6,921,000 1,858,000 5,674,000 591,000 1,242,000 1,341,000 5,040,000 1,904,000 10,899,000 586,000 783,000 2,351,000 4,121,000 5,021,000 6,399,000 4,358,000 9,237,000 2,296,000 2,057,000 2,395,000 2,959,000 2,618,000 3,503,000 3,918 4,209,000 4,456,000 2,911,000 5,464,000 9,593,000 5,774,000  
  inventories8,481,000 11,502,000 12,512,000 28,452,000 28,723,000 30,259,000 28,425,000 25,634,000 25,538,000 22,200,000 22,033,000 20,645,000 19,811,000 24,032,000 11,057,000 8,582,000 7,085,000 7,776,000 7,537,000 8,033,000 7,385,000 8,309,000 5,809,000 6,121,000 6,737,000 7,108,000 4,873,000 4,139,000 2,915,000 2,249,000 2,606,000 2,484,000 1,996,000 2,794,000 2,601,000 2,768,000 2,817,000 2,779,000 2,591,000 2,718,000 5,511,000 4,699,000 3,700,000 1,930,000 1,510,000              
  other current assets226,109,000 222,571,000 217,934,000 184,194,000 194,715,000 174,060,000 184,449,000 181,075,000 177,872,000 159,724,000 168,254,000 143,173,000 142,759,000 150,577,000 98,686,000 102,473,000 8,353,000 8,567,000 9,814,000 7,518,000 7,372,000 5,786,000 8,074,000 8,727,000 7,800,000 5,724,000 7,417,000 5,415,000 7,553,000 7,613,000 7,376,000 7,058,000 6,309,000 7,023,000 6,791,000 8,147,000 8,004,000 6,439,000 6,514,000 5,085,000 6,988,000 7,113,000 6,378,000 4,229,000 4,238,000 7,363,000 9,614,000 6,461,000 6,830,000 7,918,000 6,600 7,459,000 7,260,000 8,574,000 8,236,000 9,281,000 7,686,000  
  total current assets2,577,150,000 2,418,932,000 2,620,290,000 2,713,850,000 2,329,383,000 2,415,675,000 2,641,853,000 2,584,650,000 2,616,754,000 2,542,619,000 2,202,694,000 2,152,126,000 2,191,148,000 2,253,124,000 2,373,949,000 2,207,886,000 681,163,000 705,797,000 722,053,000 735,510,000 763,304,000 669,061,000 431,829,000 423,438,000 361,586,000 350,419,000 347,613,000 360,139,000 377,089,000 410,720,000 437,395,000 483,137,000 507,550,000 536,885,000 530,415,000 596,126,000 619,247,000 647,512,000 663,692,000 518,384,000 529,543,000 555,180,000 352,851,000 161,387,000 210,777,000 296,067,000 206,203,000 136,923,000 148,274,000 90,731,000 105,858 114,242,000 72,367,000 96,991,000 159,355,000 182,292,000 208,881,000  
  property, plant and equipment111,951,000 102,925,000 94,251,000 82,502,000 75,902,000 72,795,000 71,043,000 70,928,000 91,634,000 85,158,000 74,294,000 180,806,000 177,015,000 177,724,000 133,519,000 132,160,000 88,068,000 86,321,000 86,641,000 86,198,000 87,273,000 88,312,000 89,694,000 91,084,000 92,598,000 94,008,000 95,132,000 96,615,000 98,019,000 88,010,000 37,680,000 35,703,000 35,549,000 36,071,000 36,171,000 27,338,000 26,911,000 26,636,000 24,183,000 17,371,000 14,019,000 10,494,000 8,274,000 6,583,000 6,890,000 7,042,000 7,157,000 7,227,000 7,563,000 8,208,000 9,130 10,181,000 22,837,000 26,665,000 30,857,000 32,172,000 32,721,000  
  right-of-use assets163,933,000 159,269,000 161,856,000 164,424,000 166,939,000 169,431,000 171,896,000 174,310,000 176,718,000 179,148,000 181,544,000                                                
  deposits and other assets132,099,000 131,822,000 127,278,000 120,323,000 118,904,000 106,027,000 105,280,000 104,083,000 86,025,000 78,296,000 75,344,000 59,434,000 58,916,000 58,949,000 25,954,000 12,910,000 4,533,000 5,299,000 5,438,000 5,359,000 5,481,000 5,601,000 5,824,000 5,939,000 6,126,000 2,460,000 2,570,000 2,845,000 3,121,000 3,269,000 3,398,000 3,528,000 3,658,000 3,789,000 3,211,000 3,269,000 3,441,000 3,590,000 3,739,000 5,274,000 5,557,000 7,229,000 2,854,000 2,806,000 2,809,000 2,797,000 4,276,000 2,433,000 2,667,000 2,883,000 3,201 3,359,000 3,220,000 3,422,000 8,052,000 8,253,000 8,411,000  
  total assets2,985,133,000 2,812,948,000 3,003,675,000 3,081,099,000 2,691,128,000 2,763,928,000 2,990,072,000 2,933,971,000 2,971,131,000 2,885,221,000 2,533,876,000 2,421,971,000 2,456,133,000 2,519,092,000 2,835,889,000 2,667,784,000 793,803,000 817,777,000 834,616,000 847,156,000 881,916,000 788,651,000 552,961,000 545,686,000 485,681,000 472,394,000 470,807,000 484,894,000 505,785,000 529,572,000 505,942,000 550,477,000 575,858,000 606,351,000 599,723,000 657,184,000 680,578,000 709,161,000 724,506,000 574,150,000 584,692,000 609,399,000 405,424,000 213,003,000 263,255,000 349,904,000 255,907,000 187,768,000 201,919,000 150,637,000 166,373 177,382,000 146,526,000 175,648,000 255,271,000 279,962,000 312,726,000  
  liabilities and stockholders’ equity                                                          
  current liabilities:                                                          
  accounts payable22,800,000 17,456,000 42,964,000 9,052,000 9,243,000 13,082,000 26,027,000 5,615,000 24,021,000 10,499,000 17,921,000 20,545,000 10,351,000 16,125,000 13,332,000 28,660,000 15,627,000 13,453,000 9,869,000 11,009,000 8,781,000 9,461,000 5,385,000 10,239,000 5,256,000 6,194,000 5,344,000 8,300,000 6,653,000 3,071,000 4,652,000 6,523,000 3,392,000 5,355,000 4,843,000 4,696,000 5,554,000 6,659,000 7,445,000 5,710,000 6,885,000 5,716,000 5,633,000 4,507,000 4,161,000 3,274,000 4,288,000 3,003,000 3,267,000 2,483,000 2,095 2,833,000 2,297,000 2,240,000 2,818,000 3,416,000 3,349,000  
  accrued compensation46,564,000 26,575,000 69,614,000 40,558,000 35,018,000 21,537,000 67,727,000 33,781,000 29,322,000 18,160,000 49,178,000 30,410,000 24,985,000 16,525,000 16,264,000 29,268,000 7,164,000 6,430,000 4,328,000 12,168,000 6,653,000 7,031,000 3,818,000 7,878,000 5,836,000 4,939,000 3,502,000 9,183,000 5,233,000 4,406,000 3,076,000 6,831,000 4,833,000 4,312,000 2,971,000 7,135,000 4,763,000 4,460,000 3,181,000 6,835,000 3,956,000 3,631,000 2,449,000 4,920,000 2,379,000 2,017,000 6,222,000 1,332,000 1,628,000 1,517,000 3,706 1,306,000 1,736,000 1,811,000 3,819,000 3,033,000 2,058,000  
  accrued liabilities98,957,000 102,735,000 108,438,000 124,396,000 114,330,000 106,048,000 147,894,000 118,968,000 104,745,000 112,702,000 140,101,000 128,002,000 134,336,000 99,256,000 45,130,000 48,361,000 29,140,000 25,166,000 27,903,000 22,092,000 22,283,000 16,514,000 17,758,000 15,401,000 11,900,000 15,619,000 15,600,000 18,655,000 15,071,000 10,873,000 8,134,000 12,389,000 10,285,000 13,302,000 9,371,000 12,339,000 7,491,000 8,422,000 7,750,000 9,556,000 5,979,000 7,441,000 5,301,000 5,278,000 5,094,000 7,300,000 6,071,000 6,846,000 6,932,000 7,871,000 8,643 10,042,000 7,988,000 11,902,000 10,430,000 7,900,000 8,049,000  
  income taxes payable81,000 126,000 34,000 41,000 284,000 2,210,000 2,151,000 31,070,000 24,732,000 17,286,000 6,249,000 16,000 14,000 901,000 18,401,000                     7,323,000 15,864,000 23,233,000 29,627,000                    
  0 percent convertible senior notes630,118,000 629,326,000 628,535,000 627,745,000 626,955,000 626,167,000 625,380,000 624,594,000 623,809,000 623,025,000 622,242,000 621,460,000 620,678,000 619,898,000                                             
  current portion of deferred contract revenue75,910,000 81,097,000 78,989,000 76,018,000 94,066,000 130,406,000 151,128,000 204,824,000 96,252,000 92,335,000 90,577,000 99,511,000 93,393,000 91,437,000 144,846,000 160,256,000 51,727,000 51,560,000 54,428,000 48,135,000 55,977,000 40,409,000 35,244,000 35,925,000 23,427,000 22,998,000 34,320,000 36,584,000 52,428,000 68,719,000 73,392,000 74,502,000 77,268,000 77,268,000 70,890,000 75,681,000 76,941,000 82,092,000 85,581,000 92,662,000 99,794,000 101,507,000 57,951,000 7,804,000 6,070,000 1,043,000 1,044,000 571,000 712,000 1,111,000 1,514 1,410,000 4,926,000 10,435,000 15,801,000 17,523,000 15,832,000  
  other current liabilities22,806,000 22,304,000 9,279,000 10,034,000 8,799,000 9,988,000 8,831,000 9,952,000 8,903,000 8,239,000 7,535,000                                                
  total current liabilities897,236,000 250,293,000 309,318,000 304,566,000 306,162,000 327,648,000 448,090,000 404,210,000 287,975,000 259,221,000 311,561,000 283,454,000 267,811,000 228,450,000 252,473,000 280,294,000 107,325,000 100,816,000 100,836,000 97,812,000 103,278,000 86,995,000 70,295,000 74,322,000 51,601,000 55,063,000 61,707,000 76,112,000 83,542,000 91,980,000 94,399,000 105,890,000 100,916,000 105,214,000 92,095,000 111,444,000 114,719,000 127,861,000 136,460,000 124,698,000 117,683,000 127,111,000 80,260,000 29,966,000 25,178,000 101,941,000 25,139,000 19,436,000 20,281,000 20,845,000 23,793 23,905,000 26,053,000 36,062,000 42,897,000 42,132,000 39,643,000  
  long-term deferred contract revenue125,095,000 140,678,000 156,504,000 173,776,000 188,701,000 215,088,000 241,184,000 249,272,000 254,398,000 272,973,000 287,768,000 294,656,000 315,196,000 333,138,000 542,416,000 567,359,000 110,614,000 120,387,000 130,755,000 142,790,000 151,006,000 75,184,000 58,816,000 66,656,000 36,961,000 31,715,000 35,469,000 17,474,000 19,415,000 21,356,000 32,065,000 50,413,000 70,900,000 90,164,000 81,457,000 107,097,000 125,237,000 143,376,000 154,293,000 172,766,000 191,279,000 214,202,000 84,798,000 8,131,000 9,310,000 143,000 44,000            
  1.75 percent convertible senior notes566,420,000 565,721,000 565,026,000 564,335,000 563,647,000 562,964,000 562,285,000 561,609,000 560,937,000                                                  
  liability related to sale of future royalties541,205,000 536,141,000 542,212,000 538,102,000 533,754,000 525,072,000 513,736,000 512,700,000 510,174,000 505,081,000                                                 
  long-term lease liabilities164,379,000 159,392,000 161,805,000 168,372,000 166,438,000 168,674,000 170,875,000 173,038,000 175,020,000 177,000,000 178,941,000                                                
  long-term obligations59,074,000 55,671,000 51,924,000 41,735,000 41,773,000 41,800,000 41,836,000 48,801,000 16,436,000 7,487,000 7,126,000                                                
  total liabilities2,353,409,000 2,337,222,000 2,415,324,000 2,418,631,000 2,427,430,000 2,467,413,000 2,603,386,000 2,618,511,000 2,542,830,000 2,398,651,000 1,960,989,000 1,827,610,000 1,831,407,000 1,809,518,000 1,448,469,000 1,480,624,000 449,031,000 450,917,000 460,514,000 468,766,000 480,470,000 387,570,000 351,870,000 362,920,000 315,404,000 318,080,000 319,935,000 313,460,000 318,960,000 317,355,000 278,239,000 305,935,000 322,149,000 344,122,000 315,286,000 355,119,000 375,753,000 403,344,000 421,836,000 469,902,000 476,940,000 509,228,000 327,949,000 202,819,000 201,041,000 270,473,000 158,005,000 154,172,000 156,454,000   173,342,000       
  stockholders’ equity:                                                          
  common stock159,000 159,000 158,000 158,000 146,000 146,000 144,000 143,000 143,000 143,000 142,000 142,000 142,000 142,000 140,000 138,000 118,000 118,000 118,000 116,000 116,000 114,000 103,000 102,000 102,000 100,000 100,000 100,000 100,000 100,000 100,000 99,000 99,000 99,000 99,000 99,000 98,000 98,000 98,000 97,000 96,000 95,000 93,000 87,000 82,000 82,000 82,000 74,000 73,000 73,000 72 72,000 58,000 58,000 57,000 57,000 56,000  
  additional paid-in capital2,932,747,000 2,901,262,000 2,868,812,000 2,831,942,000 2,303,369,000 2,270,047,000 2,215,098,000 2,148,002,000 2,118,309,000 2,089,358,000 2,059,850,000 2,034,554,000 2,008,794,000 1,983,078,000 2,117,969,000 2,047,250,000 1,365,407,000 1,352,994,000 1,343,874,000 1,324,804,000 1,315,643,000 1,292,745,000 1,091,842,000 1,077,150,000 1,073,658,000 1,019,936,000 1,016,497,000 1,013,592,000 1,009,330,000 1,006,288,000 1,003,595,000 1,000,181,000 995,149,000 991,436,000 988,053,000 985,620,000 978,411,000 972,697,000 967,648,000 905,721,000 900,303,000 890,435,000 884,434,000 820,422,000 887,579,000 884,506,000 880,954,000 802,063,000 795,026,000 774,366,000 770,263 764,555,000 623,385,000 623,361,000 622,395,000 622,106,000 610,517,000  
  accumulated other comprehensive income                16,894,000 24,719,000 29,000,000 21,080,000 29,021,000   12,480,000      399,000 689,000 949,000 1,162,000 941,000 1,379,000 2,153,000 3,678,000 2,324,000 473,000 982,000  2,730,000 2,123,000 511,000 418,000 2,081,000 4,278,000 2,045,000 2,114,000 5,739,000 3,178 2,349,000 141,000 544,000 956,000  4,747,000  
  accumulated deficit -2,396,746,000 -2,249,808,000 -2,145,459,000 -2,004,979,000 -1,938,714,000 -1,795,911,000 -1,786,648,000 -1,639,238,000 -1,553,948,000 -1,429,625,000 -1,377,195,000 -1,330,203,000 -1,225,068,000 -882,850,000 -967,293,000 -1,037,647,000 -1,010,971,000 -998,890,000                          -840,795,000              
  total stockholders' equity631,724,000                 366,860,000                                         
  total liabilities and stockholders’ equity2,985,133,000 2,812,948,000 3,003,675,000 3,081,099,000 2,691,128,000 2,763,928,000 2,990,072,000 2,933,971,000 2,971,131,000 2,885,221,000 2,533,876,000 2,421,971,000 2,456,133,000 2,519,092,000 2,835,889,000 2,667,784,000 793,803,000  834,616,000 847,156,000 881,916,000 788,651,000 552,961,000 545,686,000 485,681,000 472,394,000 470,807,000 484,894,000 505,785,000 529,572,000 505,942,000 550,477,000 575,858,000 606,351,000 599,723,000 657,184,000 680,578,000 709,161,000 724,506,000           150,637,000 166,373 177,382,000   255,271,000 279,962,000 312,726,000  
  accumulated other comprehensive loss -28,949,000 -30,811,000 -24,173,000 -34,838,000 -34,964,000 -32,645,000 -46,037,000 -50,913,000 -48,983,000 -57,480,000 -63,140,000 -54,007,000 -48,578,000 -27,608,000 -32,016,000                                           
  total stockholders’ equity 475,726,000 588,351,000 662,468,000 263,698,000 296,515,000 386,686,000 315,460,000 428,301,000 486,570,000 572,887,000 594,361,000 624,726,000 709,574,000 1,387,420,000 1,187,160,000 344,772,000  374,102,000 378,390,000 401,446,000 401,081,000 201,091,000 182,766,000 170,277,000 154,314,000 150,872,000 171,434,000 186,825,000 212,217,000 227,703,000 244,542,000 253,709,000 262,229,000 284,437,000 302,065,000 304,825,000 305,817,000 302,670,000 67,092,000 68,078,000 59,023,000 54,621,000 232,000 47,284,000 56,898,000 68,563,000 1,577,000 6,713,000  2,665 4,040,000    11,611,000 47,554,000  
  0.125 percent convertible senior notes   44,467,000 44,422,000 44,377,000 44,332,000 44,287,000 114,081,000 545,053,000 544,504,000 543,955,000 543,407,000 542,860,000                                             
  long-term mortgage debt         8,811,000 8,847,000 58,978,000 59,222,000 59,462,000 59,860,000 59,842,000                                           
  patents           29,605,000 29,054,000 29,295,000 25,220,000 24,032,000 16,879,000 16,729,000 16,383,000 15,517,000 20,810,000 20,149,000 19,604,000 18,646,000 18,180,000 17,701,000 17,071,000 16,259,000 16,994,000 16,444,000 15,773,000 15,821,000 16,208,000 16,152,000 15,919,000 15,909,000 15,851,000 15,709,000 16,616,000 16,260,000 18,126,000 18,538,000 18,390,000 17,605,000 17,376,000 17,037,000 16,836,000 17,042,000 18,688,000 18,875,000 18,773 20,148,000 19,869,000 19,745,000 25,981,000 24,691,000 23,556,000  
  current portion of long-term obligations           4,970,000 4,732,000 4,206,000 14,500,000 13,749,000 3,667,000 4,207,000 4,308,000 4,408,000 4,649,000 4,853,000 4,508,000 4,879,000 5,182,000 5,313,000 2,941,000 3,390,000 4,157,000 4,911,000 5,145,000 5,645,000 5,138,000 4,977,000 4,020,000 4,270,000 4,106,000 2,995,000 2,876,000 2,065,000  3,669,000 5,471,000 7,457,000 7,474,000 7,482,000 7,514,000 7,684,000 7,742,000 7,863,000 7,835 8,314,000 9,106,000 9,674,000 10,029,000 10,260,000 10,355,000  
  long-term obligations, less current portion           25,107,000 25,093,000 25,710,000 16,305,000 4,914,000 4,039,000 4,510,000 5,523,000 6,542,000 6,384,000 7,382,000 6,498,000 7,402,000 8,404,000 9,503,000 3,603,000 4,125,000 4,724,000 5,465,000 4,938,000 5,720,000 4,304,000 5,620,000 4,474,000 11,478,000 12,532,000 10,643,000 11,370,000 9,938,000 5,478,000 5,415,000 391,000 2,222,000 4,053,000 5,889,000 7,822,000 9,736,000 11,173,000 12,942,000 14,915 16,845,000 119,432,000 118,358,000 104,369,000 99,033,000 94,558,000  
  long-term deferred tax assets              277,247,000 290,796,000                                           
  1 percent convertible senior notes              577,415,000 568,215,000                                           
  total ionis stockholders’ equity              1,207,651,000 1,048,079,000                                           
  noncontrolling interest in akcea therapeutics, inc.              179,769,000 139,081,000                                           
  investment in regulus therapeutics inc.                47,426,000 56,678,000 63,586,000 52,096,000 65,004,000 62,190,000 44,863,000 33,622,000 5,563,000 5,563,000 5,400,000 4,424,000 3,145,000 2,759,000 1,726,000 870,000 5,000,000 4,070,000 127,000                        
  licenses                3,160,000 3,631,000 4,101,000 4,572,000 5,048,000 5,528,000 6,010,000 6,579,000 7,191,000 7,806,000 8,421,000 9,036,000 10,562,000 11,129,000 11,696,000 12,288,000 12,893,000 13,454,000 14,007,000 14,542,000 15,128,000 15,714,000 16,276,000 16,861,000 17,447,000 17,958,000 18,516,000 19,684,000 20,267,000 20,851,000 21,435,000 22,018,000 22,602,000 23,186,000 23,770 24,353,000 24,937,000 25,521,000 26,619,000 27,200,000 27,782,000  
  2¾ percent convertible senior notes                155,437,000  152,005,000                                        
  long-term financing liability for leased facility                71,616,000 71,504,000 71,395,000 71,288,000 71,097,000 70,910,000 70,728,000 70,550,000 70,375,000 70,205,000 70,039,000 69,877,000 68,895,000 58,722,000                             
  liabilities and stockholders' equity                                                          
  23/4 percent convertible senior notes                 153,700,000   148,705,000 147,099,000 145,533,000  142,500,000                                  
  stockholders' equity:                                                          
  total liabilities and stockholders' equity                 817,777,000                                         
  23¤4 percent convertible senior notes                   150,334,000    143,990,000                                   
  accrued income taxes                    4,935,000 8,727,000 3,582,000                                    
  accumulated other comprehensive gain                     26,986,000 17,784,000  846,000 968,000                                 
  25¤8 percent convertible subordinated notes                                                          
  25/8 percent convertible subordinated notes                         146,031,000 143,717,000 141,448,000 139,239,000  134,964,000 132,895,000    125,100,000                       
  25/8% convertible subordinated notes                             137,073,000   130,882,000 128,907,000 126,986,000  123,265,000 121,464,000 119,713,000 162,500,000 162,500,000 162,500,000   162,500,000              
  long-term financing obligation                              10,147,000 10,147,000 10,147,000 10,147,000 10,147,000                        
  total isis pharmaceuticals, inc. stockholders’ equity                               244,542,000 253,709,000 262,229,000 284,437,000 291,722,000 292,995,000 292,851,000 288,846,000                    
  noncontrolling interest in regulus therapeutics inc.                                   10,343,000 11,830,000 12,966,000 13,824,000 4,737,000                   
  assets from discontinued operations                                                          
  liabilities from discontinued operations                                                          
  noncontrolling interest in ibis biosciences, inc. — discontinued operations                                                          
  assets held for sale                                       15,462,000                   
  liabilities held for sale                                       7,870,000                   
  noncontrolling interest in ibis biosciences, inc. — held for sale.                                       32,419,000                   
  total liabilities, noncontrolling interest and stockholders’ equity                                       574,150,000 584,692,000 609,399,000 405,424,000 213,003,000 263,255,000 349,904,000 255,907,000 187,768,000 201,919,000          
  derivative instrument related to abbott’s call option                                        1,069,000 5,147,000                 
  noncontrolling interest in regulus therapeutics llc                                        6,315,000 7,523,000 8,488,000 9,952,000               
  noncontrolling interest in ibis biosciences, inc.                                        33,359,000 33,625,000 14,366,000                
  debt issuance costs                                          4,539,000 4,938,000 5,136,000 6,110,000             
  derivative instruments related to abbott’s subscription right and call option                                          3,455,000                
  25¤8% convertible subordinated notes                                          162,500,000   162,500,000             
  5 1/2% convertible subordinated notes                                               125,000,000 125,000,000 125,000,000         
  2 5/8% convertible subordinated notes                                           162,500,000               
  noncontrolling interest in symphony genisis, inc.                                              29,339,000            
  51/2% convertible subordinated notes                                                  125,000 125,000,000 125,000,000    125,000,000  
  noncontrolling interest in symphony genisis, inc                                            14,930,000 22,533,000  32,019,000 38,752,000          
  inventory                                             1,093,000 861,000 632,000 886,000 749,000 951 917,000 1,071,000 2,722,000 20,090,000 16,074,000 14,548,000  
  current portion of 51¤2% convertible subordinated notes                                             80,825,000             
  51¤2% convertible subordinated notes                                              125,000,000            
  long-term investments                                               2,125,000 2,125,000 6,754,000  5,099,000 3,296,000 3,304,000 4,407,000 5,354,000 11,375,000  
  stockholders’ equity                                                          
  investments in corporate securities                                                  5,641        
  long-term deferred contract revenue, less current portion                                                   92,000 230,000 378,000 644,000 2,186,000 5,971,000  
  deferred compensation                                                          
  common stock warrants                                                   7,500,000       
  liabilities and stockholders’ deficit                                                          
  stockholders’ deficit:                                                          
  total stockholders’ deficit                                                          
  total liabilities and stockholders’ deficit                                                    146,526,000 175,648,000     
  revenue:                                                          
  research and development revenue under collaborative agreements                                                    10,438,000 7,135,000     
  licensing and royalty revenue                                                    154,000 307,000     
  total revenue                                                    10,592,000 7,442,000     
  operating expenses:                                                          
  research and development                                                    20,950,000 22,361,000     
  general and administrative                                                    1,910,000 2,137,000     
  compensation benefit related to stock options                                                    5,000      
  restructuring activities                                                    650,000 7,084,000     
  total operating expenses                                                    23,515,000 30,949,000     
  income from operations                                                          
  other income                                                          
  investment income                                                    349,000 504,000     
  interest expense                                                          
  net income                                                          
  accretion of dividends on preferred stock                                                          
  net income applicable to common stock                                                    -19,659,000 -29,658,000     
  basic and diluted net income per share                                                    -340 -520     
  shares used in computing basic and diluted net income per share                                                    57,524,000 57,521,000     
  5 ½% convertible subordinated notes                                                     125,000,000 125,000,000 125,000,000   
  series b convertible exchangeable 5% preferred stock, 0.001 par value; 4,605 shares authorized, no shares issued or outstanding at september 30, 2004; 16,620 shares authorized, 12,015 shares issued and outstanding at december 31, 2003                                                          
  accretion of series b preferred stock dividends                                                        2,741,000  
  series b convertible exchangeable 5% preferred stock, 0.001 par value; 4,605 shares authorized, no shares issued or outstanding at june 30, 2004; 16,620 shares authorized, 12,015 shares issued and outstanding at december 31, 2003                                                          
  series b convertible exchangeable 5% preferred stock, .001 par value; 16,620 shares authorized, 12,015 shares issued and outstanding at march 31, 2004 and december 31, 2003                                                        12,015,000  
  results of operations:                                                          

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